DiagnosticTables

Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Prior Pr_SD Pr_Like Afterbound
L_at_Amin_Fem_GP_1 26.5387000 4 10.000 45.000 21.8814000 OK 0.6143140 -7.90653e-06 Normal 26.7812000 10.000 0 OK
L_at_Amax_Fem_GP_1 168.3700000 2 40.000 250.000 196.3410000 OK 1.2787300 -1.0516e-05 Normal 192.4460000 10.000 0 OK
VonBert_K_Fem_GP_1 0.2367860 4 0.050 0.250 0.1087530 OK 0.0190711 -4.61638e-06 Normal 0.0676951 0.800 0 OK
Richards_Fem_GP_1 -1.3473800 4 -10.000 10.000 0.2343670 OK 0.2233100 -7.99587e-05 Normal 0.2343670 0.800 0 OK
SD_young_Fem_GP_1 1.5293800 4 0.100 4.000 2.9617800 OK 0.2355760 -2.18043e-08 Normal 0.0834877 0.800 0 OK
SD_old_Fem_GP_1 13.2011000 3 0.100 50.000 8.8780000 OK 0.4688300 -7.61692e-07 Normal 1.8157500 0.800 0 OK
SR_LN(R0) 9.4480200 1 3.000 20.000 8.5293800 OK 0.1547880 -5.25426e-05 No_prior NA NA NA OK
SR_regime_BLK1add_16 0.0348550 2 -5.000 5.000 -0.7047490 OK 0.1487660 -1.5558e-06 Normal 0.0000000 2.500 0 OK
InitF_seas_1_flt_2A2-LL-n 0.0000000 1 0.000 1.000 0.0968840 LO 0.0000282 -3.39318e-06 No_prior NA NA NA CHECK
InitF_seas_1_flt_14A3-OBJ 0.0000000 1 0.000 1.000 0.0002869 LO 0.0000269 3.82294e-08 No_prior NA NA NA CHECK
LnQ_base_EPO-LL-survey-early(24) -2.3123800 1 -15.000 15.000 0.2911470 OK 0.2485800 -2.00071e-05 No_prior NA NA NA OK
Q_extraSD_EPO-LL-survey-early(24) -0.0436420 2 -1.000 1.000 -0.0024466 OK 0.0160074 -1.39242e-06 No_prior NA NA NA OK
LnQ_base_EPO-LL-survey-late(25) -2.1850900 1 -15.000 15.000 0.2598620 OK 0.2676650 -3.57134e-05 No_prior NA NA NA OK
SizeSpline_GradLo_A1-LL-n(1) -0.0002706 3 -0.001 1.000 -0.0002488 LO 0.0261599 2.54132e-08 Sym_Beta 0.0000000 0.001 0 CHECK
SizeSpline_GradHi_A1-LL-n(1) -0.1514790 3 -1.000 0.001 -0.2297910 OK 0.0995715 1.48011e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_2_A1-LL-n(1) -3.1127800 2 -9.000 7.000 -3.5936900 OK 1.0882700 -2.15958e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_4_A1-LL-n(1) 0.5662350 2 -9.000 7.000 0.7114940 OK 0.5642190 -9.68191e-08 Sym_Beta 0.0000000 0.001 0 OK
Size_DblN_peak_A2-LL-n(2) 134.9540000 2 20.000 199.000 175.0020000 OK 4.2836000 -2.01891e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_A2-LL-n(2) 6.8320900 3 -15.000 15.000 7.5641700 OK 0.1654380 4.13621e-06 No_prior NA NA NA OK
Size_DblN_peak_A3-LL-n(3) 127.8570000 2 20.000 199.000 149.7520000 OK 3.0386000 7.44142e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A3-LL-n(3) -10.6782000 3 -15.000 15.000 -1.1705900 OK 63.5604000 -4.79068e-09 No_prior NA NA NA OK
Size_DblN_ascend_se_A3-LL-n(3) 6.4418300 3 -15.000 15.000 7.0019700 OK 0.1735570 3.05611e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A3-LL-n(3) 7.7648400 3 -15.000 15.000 6.7549300 OK 0.2447070 2.15772e-06 No_prior NA NA NA OK
Size_DblN_peak_A4-LL-n(4) 120.1270000 2 20.000 199.000 166.8480000 OK 4.7830700 -2.57948e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A4-LL-n(4) 4.7053100 3 -15.000 15.000 -1.3043000 OK 139.7000000 2.6601e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_A4-LL-n(4) 6.4375000 3 -15.000 15.000 7.5892000 OK 0.2411120 1.78407e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A4-LL-n(4) 6.4376300 3 -15.000 15.000 6.9103900 OK 132.0630000 1.8803e-09 No_prior NA NA NA OK
Size_DblN_peak_A5-LL-n(5) 136.2810000 2 20.000 199.000 161.0020000 OK 3.0841500 -1.95285e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A5-LL-n(5) -10.8494000 3 -15.000 15.000 -9.8290200 OK 61.8030000 -2.70406e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_A5-LL-n(5) 6.8522900 3 -15.000 15.000 7.2693700 OK 0.1365490 1.67401e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A5-LL-n(5) 7.8417000 3 -15.000 15.000 7.0943400 OK 0.2949810 8.19647e-07 No_prior NA NA NA OK
Size_DblN_peak_A6-LL-n(6) 119.0890000 2 20.000 199.000 126.5040000 OK 2.0262200 -6.47119e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A6-LL-n(6) -11.9971000 3 -15.000 15.000 -11.2735000 OK 49.4916000 1.62682e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_A6-LL-n(6) 6.2039400 3 -15.000 15.000 6.4165200 OK 0.1421390 8.28629e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A6-LL-n(6) 6.7069700 3 -15.000 15.000 7.1019100 OK 0.1422150 -1.13475e-07 No_prior NA NA NA OK
Size_DblN_peak_A2-OBJ(13) 44.1032000 2 20.000 199.000 42.9317000 OK 0.8682830 -6.13053e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A2-OBJ(13) -12.7617000 3 -15.000 15.000 -12.6847000 OK 40.4349000 -1.39634e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_A2-OBJ(13) 3.9867400 3 -15.000 15.000 3.8106700 OK 0.1994870 8.66564e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A2-OBJ(13) 7.4552600 3 -15.000 15.000 7.7248100 OK 0.0812887 -5.66077e-06 No_prior NA NA NA OK
Size_DblN_peak_A3-OBJ(14) 49.7766000 2 20.000 199.000 50.4889000 OK 2.1820400 -1.76077e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A3-OBJ(14) -0.6724530 3 -15.000 15.000 -0.3627170 OK 0.1519140 -6.7755e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_A3-OBJ(14) 4.6611700 3 -15.000 15.000 4.7803300 OK 0.3292180 4.74269e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A3-OBJ(14) 6.3083200 3 -15.000 15.000 5.9557500 OK 0.3621180 -1.19424e-06 No_prior NA NA NA OK
Size_DblN_peak_A4-OBJ(15) 53.0580000 2 20.000 199.000 53.2223000 OK 2.2598800 1.04265e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A4-OBJ(15) -11.5416000 3 -15.000 15.000 -11.5603000 OK 54.5097000 1.57573e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_A4-OBJ(15) 4.7714100 3 -15.000 15.000 4.7623400 OK 0.3348840 1.64945e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A4-OBJ(15) 6.3275500 3 -15.000 15.000 6.3711300 OK 0.2874050 2.46463e-06 No_prior NA NA NA OK
SizeSpline_GradLo_A5-OBJ(16) 0.6249000 3 -0.001 1.000 0.6111100 OK 0.0368649 -3.94704e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_GradHi_A5-OBJ(16) 0.0006279 3 -1.000 0.001 -0.0762291 HI 0.0148082 4.76463e-08 Sym_Beta 0.0000000 0.001 0 CHECK
SizeSpline_Val_1_A5-OBJ(16) -8.9987100 2 -9.000 7.000 -8.9987900 LO 0.0440717 5.35168e-07 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_2_A5-OBJ(16) 0.3963470 2 -9.000 7.000 0.2276060 OK 0.3035390 -2.68021e-07 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_4_A5-OBJ(16) -0.3083170 2 -9.000 7.000 0.1508790 OK 0.3239740 3.68695e-07 Sym_Beta 0.0000000 0.001 0 OK
Size_DblN_peak_A6-OBJ(17) 91.3149000 2 20.000 199.000 115.7290000 OK 13.1520000 3.25513e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A6-OBJ(17) -1.3305300 3 -15.000 15.000 -1.5790300 OK 0.8953480 -1.51833e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_A6-OBJ(17) 6.7451600 3 -15.000 15.000 7.4926300 OK 0.6173280 -2.39446e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A6-OBJ(17) 6.7600900 3 -15.000 15.000 6.7459200 OK 0.7749940 -7.47101e-07 No_prior NA NA NA OK
SizeSpline_GradLo_A2-NOADEL(19) 0.8328270 3 -0.001 1.000 0.8658560 OK 0.4587950 3.9776e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_GradHi_A2-NOADEL(19) -0.3056770 3 -1.000 0.001 -0.4704060 OK 0.2636520 1.61341e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_1_A2-NOADEL(19) -8.8876900 2 -9.000 7.000 -8.9129500 LO 3.4707400 4.34325e-08 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_2_A2-NOADEL(19) 0.9511360 2 -9.000 7.000 0.8508310 OK 1.5525900 -2.30354e-07 Sym_Beta 0.0000000 0.001 0 OK
SizeSpline_Val_4_A2-NOADEL(19) 0.8085450 2 -9.000 7.000 1.5249200 OK 1.8097100 2.37764e-07 Sym_Beta 0.0000000 0.001 0 OK
Size_DblN_peak_A3-NOADEL(20) 94.0003000 2 20.000 199.000 101.8980000 OK 14.9973000 -4.77466e-08 No_prior NA NA NA OK
Size_DblN_top_logit_A3-NOADEL(20) -2.0232600 3 -15.000 15.000 -2.2875400 OK 1.4320100 4.6184e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_A3-NOADEL(20) 7.2740700 3 -15.000 15.000 7.4569200 OK 0.6534560 1.17209e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A3-NOADEL(20) 6.3757900 3 -15.000 15.000 6.5508500 OK 0.6015610 4.33093e-07 No_prior NA NA NA OK
Size_DblN_peak_EPO-LL-survey-early(24) 124.1760000 2 20.000 199.000 169.6480000 OK 4.8407900 2.90364e-06 No_prior NA NA NA OK
Size_DblN_top_logit_EPO-LL-survey-early(24) -1.7651900 3 -15.000 15.000 -9.1938900 OK 1.2820500 2.36885e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_EPO-LL-survey-early(24) 6.1968600 3 -15.000 15.000 7.4523700 OK 0.3010470 -2.69606e-06 No_prior NA NA NA OK
Size_DblN_descend_se_EPO-LL-survey-early(24) 8.0474800 3 -15.000 15.000 6.0058300 OK 0.7297280 1.5908e-06 No_prior NA NA NA OK
Size_DblN_peak_EPO-LL-survey-late(25) 137.8480000 2 20.000 199.000 169.1050000 OK 2.6897900 2.124e-07 No_prior NA NA NA OK
Size_DblN_top_logit_EPO-LL-survey-late(25) -9.6206600 3 -15.000 15.000 -10.6900000 OK 74.1562000 -2.03023e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_EPO-LL-survey-late(25) 6.8801800 3 -15.000 15.000 7.4117800 OK 0.0962654 -2.48361e-06 No_prior NA NA NA OK
Size_DblN_descend_se_EPO-LL-survey-late(25) 8.6865300 3 -15.000 15.000 6.3715000 OK 0.3724530 -3.04654e-06 No_prior NA NA NA OK
Size_DblN_peak_A2-LL-n(2)_BLK2repl_17 121.7240000 2 20.000 199.000 178.1730000 OK 4.3114800 -3.5488e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A2-LL-n(2)_BLK2repl_17 -0.4913990 3 -15.000 15.000 -10.4270000 OK 0.3687610 -4.80487e-06 No_prior NA NA NA OK
Size_DblN_ascend_se_A2-LL-n(2)_BLK2repl_17 6.2657700 3 -15.000 15.000 7.6886400 OK 0.2735990 -1.56699e-06 No_prior NA NA NA OK
Size_DblN_descend_se_A2-LL-n(2)_BLK2repl_17 7.3891400 3 -15.000 15.000 5.2776000 OK 0.7979390 -1.42259e-06 No_prior NA NA NA OK
Size_DblN_peak_A3-LL-n(3)_BLK2repl_17 139.7580000 2 20.000 199.000 165.9000000 OK 7.6666400 -4.00921e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A3-LL-n(3)_BLK2repl_17 -2.2579800 3 -15.000 15.000 -9.6241100 OK 2.0167900 -2.67861e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_A3-LL-n(3)_BLK2repl_17 6.8666400 3 -15.000 15.000 7.2852400 OK 0.3372630 8.16713e-08 No_prior NA NA NA OK
Size_DblN_descend_se_A3-LL-n(3)_BLK2repl_17 6.6756900 3 -15.000 15.000 5.4009300 OK 0.7045530 1.81696e-07 No_prior NA NA NA OK
Size_DblN_peak_A4-LL-n(4)_BLK2repl_17 113.7950000 2 20.000 199.000 163.8220000 OK 9.0031100 -1.25053e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A4-LL-n(4)_BLK2repl_17 -2.0061500 3 -15.000 15.000 -1.8116900 OK 2.9957800 -5.21298e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_A4-LL-n(4)_BLK2repl_17 5.8823000 3 -15.000 15.000 7.5732300 OK 0.6795200 7.53474e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A4-LL-n(4)_BLK2repl_17 8.4174200 3 -15.000 15.000 6.3611800 OK 1.1758500 -4.80645e-07 No_prior NA NA NA OK
Size_DblN_peak_A5-LL-n(5)_BLK2repl_17 136.3520000 2 20.000 199.000 149.6190000 OK 3.3588500 -1.1577e-06 No_prior NA NA NA OK
Size_DblN_top_logit_A5-LL-n(5)_BLK2repl_17 -10.5903000 3 -15.000 15.000 -10.2978000 OK 64.4573000 6.62238e-09 No_prior NA NA NA OK
Size_DblN_ascend_se_A5-LL-n(5)_BLK2repl_17 6.6305800 3 -15.000 15.000 6.8287000 OK 0.2171220 7.96161e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A5-LL-n(5)_BLK2repl_17 6.4757300 3 -15.000 15.000 6.3689100 OK 0.3019280 4.14979e-08 No_prior NA NA NA OK
Size_DblN_peak_A6-LL-n(6)_BLK2repl_17 105.9420000 2 20.000 199.000 120.1350000 OK 7.7288100 -9.80185e-07 No_prior NA NA NA OK
Size_DblN_top_logit_A6-LL-n(6)_BLK2repl_17 -2.3156900 3 -15.000 15.000 -9.4204000 OK 1.2287100 -8.3882e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_A6-LL-n(6)_BLK2repl_17 5.2812200 3 -15.000 15.000 6.2344200 OK 0.8136590 1.47808e-07 No_prior NA NA NA OK
Size_DblN_descend_se_A6-LL-n(6)_BLK2repl_17 6.6501100 3 -15.000 15.000 7.0695400 OK 0.3783920 2.2968e-07 No_prior NA NA NA OK

Table of estimated parameters sorted by parameters with the largest gradients; any parameter with a gradient value with an absolute value above 0.001 (for SS 3.30 models) or a parameter on bounds is colored in red.
file: parameterchecks.html

label.i label.j corr
2 LnQ_base_EPO-LL-survey-late(25) SR_LN(R0) -0.978656
1 Richards_Fem_GP_1 VonBert_K_Fem_GP_1 -0.973929
6 Size_DblN_ascend_se_A6-LL-n(6)_BLK2repl_17 Size_DblN_peak_A6-LL-n(6)_BLK2repl_17 0.955069
5 Size_DblN_ascend_se_A4-LL-n(4)_BLK2repl_17 Size_DblN_peak_A4-LL-n(4)_BLK2repl_17 0.955801
3 Size_DblN_ascend_se_A2-LL-n(2) Size_DblN_peak_A2-LL-n(2) 0.95652
4 Size_DblN_ascend_se_A4-LL-n(4) Size_DblN_peak_A4-LL-n(4) 0.960472

Table of estimated parameters with the ten highest correlation rates, sorted by highest correlations; any parameter with an absolute value of correlation above is colored in red.
file: correlationcheck.html

name max
198 Size_DblN_top_logit_A4-LL-n(4) 0.000183089
260 Size_DblN_top_logit_A5-LL-n(5)_BLK2repl_17 0.000371282
206 Size_DblN_top_logit_A6-LL-n(6) 0.000546369
187 SizeSpline_GradLo_A1-LL-n(1) 0.000625886
200 Size_DblN_descend_se_A4-LL-n(4) 0.00069271
182 InitF_seas_1_flt_2A2-LL-n 0.000869689
202 Size_DblN_top_logit_A5-LL-n(5) 0.00089749
218 Size_DblN_top_logit_A4-OBJ(15) 0.00117007
210 Size_DblN_top_logit_A2-OBJ(13) 0.0012471
183 InitF_seas_1_flt_14A3-OBJ 0.00139027

Table of estimated parameters with the ten lowest correlation rates, sorted by lowest correlations; any parameter with an absolute value of correlation below is colored in purple
file: lowcorrelationcheck.html