DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Afterbound
SD_young_Fem_GP_1 3.561270 3 0.1 10 3.610890 OK 0.2852460 1.37585e-06 No_prior OK
SR_LN(R0) 10.208400 1 3.0 20 9.950000 OK 0.0744076 0.00032567 No_prior OK
SR_regime_BLK1add_16 0.100307 1 -5.0 5 -0.331426 OK 0.1579660 -3.29193e-05 No_prior OK
Size_DblN_peak_LL-n-A2(2) 159.469000 2 20.0 199 154.239000 OK 2.2011500 1.3275e-06 No_prior OK
Size_DblN_top_logit_LL-n-A2(2) -11.784900 3 -15.0 15 -5.083760 OK 51.8592000 -2.60902e-09 No_prior OK
Size_DblN_ascend_se_LL-n-A2(2) 7.241180 3 -15.0 15 7.215140 OK 0.0691132 -1.84978e-05 No_prior OK
Size_DblN_descend_se_LL-n-A2(2) 6.672360 3 -15.0 15 6.478880 OK 0.2401760 5.33923e-06 No_prior OK
Size_DblN_peak_LL-n-A3(3) 118.702000 2 20.0 199 131.726000 OK 3.2866200 5.28616e-07 No_prior OK
Size_DblN_top_logit_LL-n-A3(3) -0.125069 3 -15.0 15 -10.776700 OK 0.3377920 7.96364e-06 No_prior OK
Size_DblN_ascend_se_LL-n-A3(3) 6.088420 3 -15.0 15 6.392910 OK 0.2115780 4.83463e-07 No_prior OK
Size_DblN_descend_se_LL-n-A3(3) 6.436500 3 -15.0 15 6.062330 OK 0.7658450 1.77625e-06 No_prior OK
Size_DblN_peak_LL-n-A4(4) 164.898000 2 20.0 199 157.573000 OK 4.0504700 1.25771e-05 No_prior OK
Size_DblN_ascend_se_LL-n-A4(4) 7.556370 3 -15.0 15 7.538120 OK 0.0938185 -2.78595e-05 No_prior OK
Size_DblN_peak_LL-n-A5(5) 154.912000 2 20.0 199 156.406000 OK 6.3422100 -6.30463e-07 No_prior OK
Size_DblN_top_logit_LL-n-A5(5) -9.740640 3 -15.0 15 -9.965370 OK 73.0251000 -1.54872e-08 No_prior OK
Size_DblN_ascend_se_LL-n-A5(5) 7.265260 3 -15.0 15 7.367700 OK 0.2151340 3.62489e-06 No_prior OK
Size_DblN_descend_se_LL-n-A5(5) 6.935460 3 -15.0 15 6.382800 OK 0.6726820 6.04039e-07 No_prior OK
Size_DblN_peak_LL-n-A6(6) 145.131000 2 20.0 199 133.459000 OK 4.2704400 1.75048e-06 No_prior OK
Size_DblN_top_logit_LL-n-A6(6) -8.748100 3 -15.0 15 -1.653060 OK 82.8237000 1.35533e-07 No_prior OK
Size_DblN_ascend_se_LL-n-A6(6) 7.046610 3 -15.0 15 7.030670 OK 0.1646330 4.07616e-06 No_prior OK
Size_DblN_descend_se_LL-n-A6(6) 6.960340 3 -15.0 15 7.271010 OK 0.3800670 -2.07862e-06 No_prior OK
Size_DblN_peak_LL-n-A7(7) 126.020000 2 20.0 199 130.359000 OK 2.8419700 1.87173e-06 No_prior OK
Size_DblN_top_logit_LL-n-A7(7) -10.802000 3 -15.0 15 -12.372000 OK 62.2914000 -7.13101e-08 No_prior OK
Size_DblN_ascend_se_LL-n-A7(7) 6.335480 3 -15.0 15 6.716290 OK 0.1743050 3.72464e-06 No_prior OK
Size_DblN_descend_se_LL-n-A7(7) 6.820280 3 -15.0 15 6.845070 OK 0.2370600 2.56026e-06 No_prior OK
Size_DblN_peak_OBJ-A1(15) 43.309900 2 20.0 199 41.819800 OK 2.1914900 4.78949e-06 No_prior OK
Size_DblN_top_logit_OBJ-A1(15) -11.146500 3 -15.0 15 -14.999800 OK 58.7100000 -5.21067e-09 No_prior OK
Size_DblN_ascend_se_OBJ-A1(15) 4.391230 3 -15.0 15 3.655560 OK 0.5458360 -3.08001e-06 No_prior OK
Size_DblN_descend_se_OBJ-A1(15) 7.064810 3 -15.0 15 7.132640 OK 0.2508390 8.74353e-06 No_prior OK
Size_DblN_peak_OBJ-A2(16) 46.666600 2 20.0 199 46.585600 OK 2.0157800 -3.5746e-06 No_prior OK
Size_DblN_top_logit_OBJ-A2(16) -11.929400 3 -15.0 15 -14.821300 OK 50.2520000 4.2755e-09 No_prior OK
Size_DblN_ascend_se_OBJ-A2(16) 5.045230 3 -15.0 15 4.279630 OK 0.3830140 -3.34826e-06 No_prior OK
Size_DblN_descend_se_OBJ-A2(16) 7.464610 3 -15.0 15 7.650590 OK 0.1594310 -1.01218e-05 No_prior OK
Size_DblN_peak_OBJ-A3(17) 49.242400 2 20.0 199 48.576500 OK 6.0671900 -1.13721e-06 No_prior OK
Size_DblN_top_logit_OBJ-A3(17) -0.426049 3 -15.0 15 -2.447860 OK 0.3116630 7.34855e-06 No_prior OK
Size_DblN_ascend_se_OBJ-A3(17) 5.133120 3 -15.0 15 4.554700 OK 1.0254800 -8.81355e-08 No_prior OK
Size_DblN_descend_se_OBJ-A3(17) 5.635260 3 -15.0 15 8.089520 OK 1.2264500 2.58165e-06 No_prior OK
Size_DblN_peak_OBJ-A4(18) 54.654700 2 20.0 199 50.236200 OK 3.8263300 -3.03655e-06 No_prior OK
Size_DblN_top_logit_OBJ-A4(18) -1.173040 3 -15.0 15 -0.401379 OK 0.3758530 -1.17318e-05 No_prior OK
Size_DblN_ascend_se_OBJ-A4(18) 5.291240 3 -15.0 15 4.587810 OK 0.4597590 6.86374e-06 No_prior OK
Size_DblN_descend_se_OBJ-A4(18) 6.587770 3 -15.0 15 6.009980 OK 0.6880550 1.15867e-06 No_prior OK
Size_DblN_peak_OBJ-A5(19) 77.071300 2 20.0 199 62.870700 OK 19.1328000 2.73473e-06 No_prior OK
Size_DblN_top_logit_OBJ-A5(19) -1.289160 3 -15.0 15 -0.166892 OK 1.1915200 1.20893e-05 No_prior OK
Size_DblN_ascend_se_OBJ-A5(19) 6.503430 3 -15.0 15 4.899090 OK 1.1299200 2.23965e-06 No_prior OK
Size_DblN_descend_se_OBJ-A5(19) 6.812990 3 -15.0 15 6.436180 OK 1.2431300 6.91853e-06 No_prior OK
Size_DblN_peak_LL-Survey(23) 146.918000 2 20.0 199 144.388000 OK 1.8446100 1.83505e-05 No_prior OK
Size_DblN_top_logit_LL-Survey(23) -2.855050 3 -15.0 15 -2.272860 OK 0.8750180 3.61068e-06 No_prior OK
Size_DblN_ascend_se_LL-Survey(23) 6.989180 3 -15.0 15 7.064350 OK 0.0572593 -0.000154028 No_prior OK
Size_DblN_descend_se_LL-Survey(23) 6.651880 3 -15.0 15 6.526730 OK 0.1438940 1.73511e-05 No_prior OK
Size_DblN_peak_LL-n-A2(2)_BLK2repl_17 155.185000 2 20.0 199 147.030000 OK 2.8210700 -3.71433e-06 No_prior OK
Size_DblN_peak_LL-n-A2(2)_BLK2repl_77 158.125000 2 20.0 199 157.673000 OK 1.1981000 5.35766e-06 No_prior OK
Size_DblN_top_logit_LL-n-A2(2)_BLK2repl_17 -7.339340 3 -15.0 15 -1.833120 OK 84.3411000 -7.8213e-08 No_prior OK
Size_DblN_top_logit_LL-n-A2(2)_BLK2repl_77 -11.757000 3 -15.0 15 -4.467070 OK 52.1663000 -9.29258e-08 No_prior OK
Size_DblN_ascend_se_LL-n-A2(2)_BLK2repl_17 7.164050 3 -15.0 15 7.017400 OK 0.0962401 1.48783e-05 No_prior OK
Size_DblN_ascend_se_LL-n-A2(2)_BLK2repl_77 7.104450 3 -15.0 15 7.191460 OK 0.0394015 -7.04746e-05 No_prior OK
Size_DblN_descend_se_LL-n-A2(2)_BLK2repl_17 6.368470 3 -15.0 15 6.190420 OK 0.2330920 -1.39795e-06 No_prior OK
Size_DblN_descend_se_LL-n-A2(2)_BLK2repl_77 6.122710 3 -15.0 15 6.021540 OK 0.1146330 -2.82117e-05 No_prior OK
Size_DblN_peak_LL-n-A4(4)_BLK2repl_17 157.085000 2 20.0 199 159.332000 OK 2.3261800 -8.05966e-06 No_prior OK
Size_DblN_peak_LL-n-A4(4)_BLK2repl_77 158.808000 2 20.0 199 158.382000 OK 1.5478600 7.05671e-06 No_prior OK
Size_DblN_top_logit_LL-n-A4(4)_BLK2repl_17 -10.532100 3 -15.0 15 -5.309580 OK 65.0495000 -1.60488e-10 No_prior OK
Size_DblN_top_logit_LL-n-A4(4)_BLK2repl_77 -9.675930 3 -15.0 15 -3.614960 OK 73.5431000 6.17655e-08 No_prior OK
Size_DblN_ascend_se_LL-n-A4(4)_BLK2repl_17 7.318800 3 -15.0 15 7.461570 OK 0.0824885 7.96008e-06 No_prior OK
Size_DblN_ascend_se_LL-n-A4(4)_BLK2repl_77 7.305910 3 -15.0 15 7.392250 OK 0.0442919 -3.71974e-05 No_prior OK
Size_DblN_descend_se_LL-n-A4(4)_BLK2repl_17 6.167320 3 -15.0 15 5.845520 OK 0.2374640 -1.93427e-05 No_prior OK
Size_DblN_descend_se_LL-n-A4(4)_BLK2repl_77 6.322720 3 -15.0 15 5.992220 OK 0.1445870 -3.40756e-06 No_prior OK
Size_DblN_peak_LL-n-A5(5)_BLK2repl_17 146.719000 2 20.0 199 140.718000 OK 4.0002800 -3.74772e-06 No_prior OK
Size_DblN_peak_LL-n-A5(5)_BLK2repl_77 144.510000 2 20.0 199 141.506000 OK 1.4278000 -5.65006e-06 No_prior OK
Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_17 -2.988520 3 -15.0 15 -3.547940 OK 2.1025600 -1.10134e-06 No_prior OK
Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_77 -11.263900 3 -15.0 15 -8.600140 OK 57.4758000 9.90013e-09 No_prior OK
Size_DblN_ascend_se_LL-n-A5(5)_BLK2repl_17 6.815020 3 -15.0 15 6.751830 OK 0.1595410 8.07601e-06 No_prior OK
Size_DblN_ascend_se_LL-n-A5(5)_BLK2repl_77 6.830360 3 -15.0 15 6.853290 OK 0.0608579 -7.22271e-06 No_prior OK
Size_DblN_descend_se_LL-n-A5(5)_BLK2repl_17 5.997140 3 -15.0 15 6.382450 OK 0.3400840 -8.81449e-06 No_prior OK
Size_DblN_descend_se_LL-n-A5(5)_BLK2repl_77 6.551450 3 -15.0 15 6.625660 OK 0.1228990 -5.8296e-06 No_prior OK
Size_DblN_peak_OBJ-A2(16)_BLK3repl_17 47.311100 2 20.0 199 46.181100 OK 3.3606900 2.69751e-06 No_prior OK
Size_DblN_peak_OBJ-A2(16)_BLK3repl_101 44.136900 2 20.0 199 42.986900 OK 1.2302000 4.85989e-06 No_prior OK
Size_DblN_top_logit_OBJ-A2(16)_BLK3repl_17 -10.089100 3 -15.0 15 -10.569300 OK 69.5124000 7.00782e-08 No_prior OK
Size_DblN_top_logit_OBJ-A2(16)_BLK3repl_101 -12.078800 3 -15.0 15 -12.338900 OK 48.5655000 1.17633e-07 No_prior OK
Size_DblN_ascend_se_OBJ-A2(16)_BLK3repl_17 3.942810 3 -15.0 15 3.766330 OK 0.7474460 -3.66314e-06 No_prior OK
Size_DblN_ascend_se_OBJ-A2(16)_BLK3repl_101 3.940340 3 -15.0 15 3.475730 OK 0.3136260 -2.0805e-06 No_prior OK
Size_DblN_descend_se_OBJ-A2(16)_BLK3repl_17 7.369540 3 -15.0 15 7.256760 OK 0.4842590 6.66452e-06 No_prior OK
Size_DblN_descend_se_OBJ-A2(16)_BLK3repl_101 7.717130 3 -15.0 15 7.546680 OK 0.1372240 1.44048e-05 No_prior OK
Size_DblN_peak_OBJ-A4(18)_BLK3repl_17 48.227100 2 20.0 199 47.486300 OK 2.9750300 2.23159e-08 No_prior OK
Size_DblN_peak_OBJ-A4(18)_BLK3repl_101 51.953700 2 20.0 199 49.878500 OK 3.3202400 5.06305e-06 No_prior OK
Size_DblN_top_logit_OBJ-A4(18)_BLK3repl_17 -10.795100 3 -15.0 15 -11.210900 OK 62.3597000 2.31152e-09 No_prior OK
Size_DblN_top_logit_OBJ-A4(18)_BLK3repl_101 -1.431370 3 -15.0 15 -6.791100 OK 0.8048150 1.18734e-05 No_prior OK
Size_DblN_ascend_se_OBJ-A4(18)_BLK3repl_17 4.054720 3 -15.0 15 3.901140 OK 0.6307200 -8.54715e-08 No_prior OK
Size_DblN_ascend_se_OBJ-A4(18)_BLK3repl_101 4.682020 3 -15.0 15 4.341380 OK 0.4997040 -1.62621e-07 No_prior OK
Size_DblN_descend_se_OBJ-A4(18)_BLK3repl_17 7.946430 3 -15.0 15 7.861290 OK 0.3632330 -6.38448e-07 No_prior OK
Size_DblN_descend_se_OBJ-A4(18)_BLK3repl_101 7.600580 3 -15.0 15 8.299170 OK 0.7381580 1.43271e-05 No_prior OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Size_DblN_ascend_se_OBJ-A5(19) Size_DblN_peak_OBJ-A5(19) 0.981203
Size_DblN_ascend_se_OBJ-A4(18) Size_DblN_peak_OBJ-A4(18) 0.960278
Size_DblN_ascend_se_OBJ-A4(18)_BLK3repl_101 Size_DblN_peak_OBJ-A4(18)_BLK3repl_101 0.956003
Size_DblN_descend_se_OBJ-A4(18)_BLK3repl_101 Size_DblN_top_logit_OBJ-A4(18)_BLK3repl_101 -0.93877
Size_DblN_ascend_se_LL-n-A3(3) Size_DblN_peak_LL-n-A3(3) 0.93227
Size_DblN_ascend_se_LL-n-A5(5)_BLK2repl_17 Size_DblN_peak_LL-n-A5(5)_BLK2repl_17 0.926138
Size_DblN_ascend_se_OBJ-A2(16)_BLK3repl_17 Size_DblN_peak_OBJ-A2(16)_BLK3repl_17 0.921752
Size_DblN_ascend_se_LL-Survey(23) Size_DblN_peak_LL-Survey(23) 0.920608
Size_DblN_ascend_se_OBJ-A4(18)_BLK3repl_17 Size_DblN_peak_OBJ-A4(18)_BLK3repl_17 0.913905
Size_DblN_ascend_se_OBJ-A3(17) Size_DblN_peak_OBJ-A3(17) 0.909984
Size_DblN_ascend_se_OBJ-A2(16) Size_DblN_peak_OBJ-A2(16) 0.900225
Size_DblN_ascend_se_OBJ-A2(16)_BLK3repl_101 Size_DblN_peak_OBJ-A2(16)_BLK3repl_101 0.895661
Size_DblN_ascend_se_LL-n-A6(6) Size_DblN_peak_LL-n-A6(6) 0.885692
Size_DblN_ascend_se_LL-n-A2(2)_BLK2repl_17 Size_DblN_peak_LL-n-A2(2)_BLK2repl_17 0.884754
Size_DblN_ascend_se_LL-n-A4(4) Size_DblN_peak_LL-n-A4(4) 0.879042
Size_DblN_descend_se_OBJ-A4(18) Size_DblN_top_logit_OBJ-A4(18) -0.867923
Size_DblN_ascend_se_OBJ-A1(15) Size_DblN_peak_OBJ-A1(15) 0.865562
Size_DblN_ascend_se_LL-n-A7(7) Size_DblN_peak_LL-n-A7(7) 0.864946
Size_DblN_descend_se_LL-n-A3(3) Size_DblN_top_logit_LL-n-A3(3) -0.862748
Size_DblN_ascend_se_LL-n-A5(5) Size_DblN_peak_LL-n-A5(5) 0.856581
Size_DblN_descend_se_OBJ-A3(17) Size_DblN_top_logit_OBJ-A3(17) -0.844631
Size_DblN_ascend_se_LL-n-A5(5)_BLK2repl_77 Size_DblN_peak_LL-n-A5(5)_BLK2repl_77 0.83553
Size_DblN_descend_se_LL-n-A4(4)_BLK2repl_17 Size_DblN_peak_LL-n-A4(4)_BLK2repl_17 -0.820418
Size_DblN_ascend_se_LL-n-A4(4)_BLK2repl_17 Size_DblN_peak_LL-n-A4(4)_BLK2repl_17 0.819233
Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_17 Size_DblN_peak_LL-n-A5(5)_BLK2repl_17 -0.81842
Size_DblN_ascend_se_LL-n-A4(4)_BLK2repl_77 Size_DblN_peak_LL-n-A4(4)_BLK2repl_77 0.800666
Size_DblN_ascend_se_LL-n-A2(2) Size_DblN_peak_LL-n-A2(2) 0.789156
Size_DblN_descend_se_LL-n-A4(4)_BLK2repl_77 Size_DblN_peak_LL-n-A4(4)_BLK2repl_77 -0.772998
Size_DblN_descend_se_LL-Survey(23) Size_DblN_top_logit_LL-Survey(23) -0.768636
Size_DblN_descend_se_LL-n-A6(6) Size_DblN_peak_LL-n-A6(6) -0.763099
Size_DblN_ascend_se_LL-n-A2(2)_BLK2repl_77 Size_DblN_peak_LL-n-A2(2)_BLK2repl_77 0.758259
Size_DblN_descend_se_LL-n-A2(2)_BLK2repl_77 Size_DblN_peak_LL-n-A2(2)_BLK2repl_77 -0.755814
Size_DblN_descend_se_LL-n-A5(5)_BLK2repl_17 Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_17 -0.741214
Main_RecrDev_95 Main_RecrDev_94 -0.735399
Size_DblN_descend_se_OBJ-A5(19) Size_DblN_top_logit_OBJ-A5(19) -0.73267
Size_DblN_top_logit_OBJ-A5(19) Size_DblN_peak_OBJ-A5(19) -0.729763
Main_RecrDev_96 Main_RecrDev_95 -0.729097
Size_DblN_descend_se_LL-n-A5(5)_BLK2repl_77 Size_DblN_peak_LL-n-A5(5)_BLK2repl_77 -0.728412
Size_DblN_top_logit_LL-Survey(23) Size_DblN_peak_LL-Survey(23) -0.719147
Size_DblN_ascend_se_LL-n-A5(5)_BLK2repl_17 Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_17 -0.71765
Size_DblN_descend_se_LL-n-A7(7) Size_DblN_peak_LL-n-A7(7) -0.712351
Main_RecrDev_34 Main_RecrDev_33 -0.710287
Main_RecrDev_56 Main_RecrDev_55 -0.706178
Size_DblN_ascend_se_OBJ-A5(19) Size_DblN_top_logit_OBJ-A5(19) -0.697763
Size_DblN_descend_se_LL-n-A5(5) Size_DblN_peak_LL-n-A5(5) -0.697097
Main_RecrDev_77 Main_RecrDev_76 -0.686562
Size_DblN_ascend_se_LL-Survey(23) Size_DblN_top_logit_LL-Survey(23) -0.685219
Main_RecrDev_94 Main_RecrDev_93 -0.684939
Main_RecrDev_69 Main_RecrDev_68 -0.683947
Main_RecrDev_73 Main_RecrDev_72 -0.683724

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Late_RecrDev_196 0
Size_DblN_top_logit_LL-n-A2(2) 0.00374204
Size_DblN_top_logit_OBJ-A2(16)_BLK3repl_101 0.00778128
Size_DblN_top_logit_OBJ-A2(16) 0.00791459
Size_DblN_top_logit_LL-n-A2(2)_BLK2repl_77 0.00858968
Size_DblN_top_logit_OBJ-A4(18)_BLK3repl_17 0.0117847
Size_DblN_top_logit_LL-n-A5(5) 0.0131669
Size_DblN_top_logit_LL-n-A5(5)_BLK2repl_77 0.0145074
Size_DblN_top_logit_LL-n-A7(7) 0.0145597
Early_InitAge_24 0.0193819
Size_DblN_top_logit_OBJ-A1(15) 0.0194209
Size_DblN_top_logit_LL-n-A4(4)_BLK2repl_17 0.02321
Early_InitAge_23 0.0246171
Early_InitAge_22 0.0315404
Size_DblN_top_logit_OBJ-A2(16)_BLK3repl_17 0.033741
Early_InitAge_21 0.0406931
Early_InitAge_20 0.0527527
Early_InitAge_19 0.0684574
Size_DblN_top_logit_LL-n-A6(6) 0.0786879
Size_DblN_top_logit_LL-n-A4(4)_BLK2repl_77 0.0794077
Early_InitAge_18 0.0884872
Main_RecrDev_25 0.0887642
Main_RecrDev_26 0.0961129
Main_RecrDev_24 0.0992881
Early_InitAge_17 0.113254
Main_RecrDev_23 0.123653
Main_RecrDev_27 0.123883
Early_InitAge_1 0.139514
Early_InitAge_16 0.142623
Main_RecrDev_185 0.143724
Main_RecrDev_186 0.145693
SD_young_Fem_GP_1 0.153804
Early_InitAge_2 0.154509
Late_RecrDev_195 0.162004
Early_InitAge_15 0.175529
Main_RecrDev_22 0.179433
Main_RecrDev_180 0.180874
Main_RecrDev_42 0.183179
Main_RecrDev_28 0.183527
Early_InitAge_3 0.184039
Main_RecrDev_17 0.189162
Early_InitAge_4 0.203067
Main_RecrDev_133 0.205409
Main_RecrDev_181 0.205896
Early_InitAge_14 0.209327
Main_RecrDev_187 0.210091
Main_RecrDev_189 0.210091
Main_RecrDev_178 0.212621
Main_RecrDev_179 0.212621
Early_InitAge_5 0.215919