DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Afterbound
SR_LN(R0) 16.3287000 1 3 25.0 17.2060000 OK 0.1269360 -4.04584e-05 No_prior OK
SR_regime_BLK1add_24 0.8307590 2 -5 5.0 0.1381980 OK 0.4005360 9.61725e-06 No_prior OK
InitF_seas_1_flt_7F7-OBJ_NC 0.5946730 2 0 5.0 0.8532900 OK 0.2603840 -3.44061e-06 No_prior OK
Size_DblN_peak_F1-OBJ_Offshore_Small(1) 47.9657000 2 20 70.0 35.0000000 OK 1.1603100 7.42715e-06 No_prior OK
Size_DblN_top_logit_F1-OBJ_Offshore_Small(1) -11.2026000 4 -15 15.0 -5.0000000 OK 58.0728000 7.59061e-06 No_prior OK
Size_DblN_ascend_se_F1-OBJ_Offshore_Small(1) 4.7271500 3 -15 15.0 4.0000000 OK 0.1483500 -2.20315e-05 No_prior OK
Size_DblN_descend_se_F1-OBJ_Offshore_Small(1) 4.4936000 3 -15 15.0 4.0000000 OK 0.8145540 1.21986e-05 No_prior OK
Size_DblN_end_logit_F1-OBJ_Offshore_Small(1) -0.8798820 3 -15 15.0 -3.0000000 OK 0.4026960 -1.59496e-05 No_prior OK
Size_DblN_peak_F2-OBJ_Offshore_Large(2) 63.3518000 2 50 109.5 58.0000000 OK 1.6525500 2.14586e-05 No_prior OK
Size_DblN_descend_se_F2-OBJ_Offshore_Large(2) 4.2776500 3 -15 15.0 5.0000000 OK 0.4863160 7.28434e-06 No_prior OK
Size_DblN_end_logit_F2-OBJ_Offshore_Large(2) -3.5170100 2 -15 15.0 -3.0000000 OK 1.5908800 -8.48341e-06 No_prior OK
Size_DblN_peak_F3-OBJ_Central_Small(3) 44.7868000 2 20 70.0 40.0000000 OK 1.3270100 -1.15069e-05 No_prior OK
Size_DblN_top_logit_F3-OBJ_Central_Small(3) -10.7093000 4 -15 15.0 -5.0000000 OK 63.2268000 1.33396e-06 No_prior OK
Size_DblN_ascend_se_F3-OBJ_Central_Small(3) 3.7622000 3 -15 15.0 4.0000000 OK 0.2622480 -8.98271e-06 No_prior OK
Size_DblN_descend_se_F3-OBJ_Central_Small(3) 4.5378200 3 -15 15.0 4.0000000 OK 0.5765350 -6.11375e-07 No_prior OK
Size_DblN_peak_F4-OBJ_Central_Large(4) 65.1382000 2 50 109.5 58.0000000 OK 2.3904100 6.32755e-05 No_prior OK
Size_DblN_descend_se_F4-OBJ_Central_Large(4) 3.7404400 3 -15 15.0 5.0000000 OK 1.2690400 6.32744e-05 No_prior OK
Size_DblN_end_logit_F4-OBJ_Central_Large(4) -2.6837800 3 -15 15.0 -3.0000000 OK 1.5976300 2.12182e-05 No_prior OK
Size_DblN_peak_F5-OBJ_SC(5) 46.8070000 2 20 109.5 50.0000000 OK 1.4799100 -3.79983e-06 No_prior OK
Size_DblN_top_logit_F5-OBJ_SC(5) -10.5442000 4 -15 15.0 -5.0000000 OK 64.9584000 -3.67798e-06 No_prior OK
Size_DblN_ascend_se_F5-OBJ_SC(5) 3.6400700 3 -15 15.0 4.0000000 OK 0.3005910 1.6165e-05 No_prior OK
Size_DblN_descend_se_F5-OBJ_SC(5) 4.6933600 3 -15 15.0 4.0000000 OK 0.4780790 1.366e-05 No_prior OK
Size_DblN_peak_F6-OBJ_CC(6) 58.8807000 2 20 109.5 50.0000000 OK 5.0034800 2.85607e-05 No_prior OK
Size_DblN_top_logit_F6-OBJ_CC(6) -1.8289700 4 -15 15.0 -5.0000000 OK 1.1968000 5.36057e-05 No_prior OK
Size_DblN_ascend_se_F6-OBJ_CC(6) 5.2749700 3 -15 15.0 4.0000000 OK 0.3699070 -4.77448e-06 No_prior OK
Size_DblN_descend_se_F6-OBJ_CC(6) 3.2113400 3 -15 15.0 4.0000000 OK 1.6938500 1.00336e-05 No_prior OK
Size_DblN_peak_F7-OBJ_NC(7) 50.4487000 2 20 109.5 50.0000000 OK 1.3091300 -3.04562e-05 No_prior OK
Size_DblN_top_logit_F7-OBJ_NC(7) -0.9706550 4 -15 15.0 -5.0000000 OK 0.3057920 3.94199e-06 No_prior OK
Size_DblN_ascend_se_F7-OBJ_NC(7) 4.3184700 3 -15 15.0 4.0000000 OK 0.1678250 -2.6496e-06 No_prior OK
Size_DblN_descend_se_F7-OBJ_NC(7) 2.3187300 3 -15 15.0 4.0000000 OK 1.8261900 8.80817e-06 No_prior OK
Size_DblN_peak_F8-NOA-Offshore_Small(8) 91.8736000 4 20 109.5 40.0000000 OK 179.5630000 -4.403e-05 No_prior OK
Size_DblN_ascend_se_F8-NOA-Offshore_Small(8) 6.0478400 3 -15 15.0 4.0000000 OK 3.7710500 9.60187e-05 No_prior OK
Size_DblN_peak_F9-NOA-Offshore_Large(9) 75.4314000 2 50 109.5 65.0000000 OK 12.2456000 -1.41159e-05 No_prior OK
Size_DblN_top_logit_F9-NOA-Offshore_Large(9) -1.6686700 4 -15 15.0 -5.0000000 OK 2.5959900 -1.50112e-05 No_prior OK
Size_DblN_ascend_se_F9-NOA-Offshore_Large(9) 5.0680100 3 -15 15.0 4.0000000 OK 1.4070200 4.05152e-05 No_prior OK
Size_DblN_descend_se_F9-NOA-Offshore_Large(9) -0.9628810 3 -15 15.0 4.0000000 OK 12.4232000 -6.33398e-07 No_prior OK
Size_DblN_end_logit_F9-NOA-Offshore_Large(9) -3.3622200 3 -15 15.0 -5.0000000 OK 6.2769900 -3.12983e-06 No_prior OK
Size_DblN_peak_F10-NOA-S(10) 47.6500000 2 20 109.5 50.0000000 OK 1.7013700 -4.69989e-05 No_prior OK
Size_DblN_top_logit_F10-NOA-S(10) -9.9350900 4 -15 15.0 -5.0000000 OK 71.0120000 3.86069e-06 No_prior OK
Size_DblN_ascend_se_F10-NOA-S(10) 3.6288000 3 -15 15.0 4.0000000 OK 0.3370370 5.72391e-05 No_prior OK
Size_DblN_descend_se_F10-NOA-S(10) 4.5725000 3 -15 15.0 4.0000000 OK 0.5355430 -1.20165e-05 No_prior OK
Size_DblN_peak_F11-NOA-C(11) 56.0079000 2 20 109.5 50.0000000 OK 3.1051500 2.21291e-05 No_prior OK
Size_DblN_top_logit_F11-NOA-C(11) -1.9952700 4 -15 15.0 -5.0000000 OK 1.0089700 1.90463e-05 No_prior OK
Size_DblN_ascend_se_F11-NOA-C(11) 4.7424700 3 -15 15.0 4.0000000 OK 0.2973360 -6.20485e-06 No_prior OK
Size_DblN_descend_se_F11-NOA-C(11) 3.5692100 3 -15 15.0 4.0000000 OK 1.3096300 1.84941e-05 No_prior OK
Size_DblN_peak_F12-NOA-N(12) 49.9031000 2 20 109.5 50.0000000 OK 2.6773600 -2.90086e-06 No_prior OK
Size_DblN_top_logit_F12-NOA-N(12) -7.9348100 4 -15 15.0 -5.0000000 OK 90.4194000 -6.74493e-06 No_prior OK
Size_DblN_ascend_se_F12-NOA-N(12) 3.7100300 3 -15 15.0 4.0000000 OK 0.4869100 1.23836e-05 No_prior OK
Size_DblN_descend_se_F12-NOA-N(12) 4.8998500 3 -15 15.0 4.0000000 OK 0.7755120 -3.766e-06 No_prior OK
Size_DblN_peak_F13-DEL-N(13) 52.5910000 2 20 109.5 60.0000000 OK 3.3860100 7.54561e-06 No_prior OK
Size_DblN_top_logit_F13-DEL-N(13) -1.3202000 4 -15 15.0 -5.0000000 OK 0.6958860 5.06702e-05 No_prior OK
Size_DblN_ascend_se_F13-DEL-N(13) 3.9365600 3 -15 15.0 4.0000000 OK 0.5191970 1.38158e-05 No_prior OK
Size_DblN_descend_se_F13-DEL-N(13) 3.7195200 3 -15 15.0 4.0000000 OK 1.6448800 -5.31559e-06 No_prior OK
SizeSpline_GradLo_F16-LL(16) 0.4629900 3 -10 10.0 2.8306400 OK 3.5383700 -8.17143e-06 No_prior OK
SizeSpline_GradHi_F16-LL(16) 0.0701834 3 -10 10.0 0.2029980 OK 0.1541300 -2.17083e-05 No_prior OK
SizeSpline_Val_2_F16-LL(16) -7.8118200 3 -9 7.0 -3.5334200 OK 2.8235300 3.8639e-06 No_prior OK
SizeSpline_Val_3_F16-LL(16) -2.9097200 3 -9 7.0 -1.8653100 OK 0.5878220 -1.55481e-05 No_prior OK
SizeSpline_Val_4_F16-LL(16) -1.7393400 3 -9 7.0 -1.1940000 OK 0.4513440 1.02022e-06 No_prior OK
SizeSpline_Val_5_F16-LL(16) -0.5963590 3 -9 7.0 -0.0436568 OK 0.3379440 -1.42871e-05 No_prior OK
Size_DblN_peak_S1-OBJ(17) 46.1800000 2 20 109.5 40.0000000 OK 0.4221080 -6.52858e-06 No_prior OK
Size_DblN_top_logit_S1-OBJ(17) -12.3761000 4 -15 15.0 -5.0000000 OK 45.1996000 -1.89083e-05 No_prior OK
Size_DblN_ascend_se_S1-OBJ(17) 4.1999000 3 -15 15.0 4.0000000 OK 0.0648414 6.596e-06 No_prior OK
Size_DblN_descend_se_S1-OBJ(17) 6.0685000 3 -15 15.0 4.0000000 OK 0.1222430 1.0552e-05 No_prior OK
Size_DblN_peak_F1-OBJ_Offshore_Small(1)_BLK2repl_25 45.4748000 3 20 70.0 35.0000000 OK 0.6785180 2.8443e-06 No_prior OK
Size_DblN_top_logit_F1-OBJ_Offshore_Small(1)_BLK2repl_25 -11.7424000 4 -15 15.0 -5.0000000 OK 52.3677000 -7.62154e-06 No_prior OK
Size_DblN_ascend_se_F1-OBJ_Offshore_Small(1)_BLK2repl_25 3.9994500 3 -15 15.0 4.0000000 OK 0.1169030 2.85253e-05 No_prior OK
Size_DblN_descend_se_F1-OBJ_Offshore_Small(1)_BLK2repl_25 2.9233800 3 -50 15.0 4.0000000 OK 0.6746040 3.0938e-05 No_prior OK
Size_DblN_peak_F6-OBJ_CC(6)_BLK2repl_25 46.5336000 3 20 109.5 50.0000000 OK 1.0009100 -1.07377e-05 No_prior OK
Size_DblN_top_logit_F6-OBJ_CC(6)_BLK2repl_25 -1.0510000 4 -15 15.0 -5.0000000 OK 0.4133540 3.31302e-05 No_prior OK
Size_DblN_ascend_se_F6-OBJ_CC(6)_BLK2repl_25 3.4944800 3 -15 15.0 4.0000000 OK 0.2166400 -2.54641e-06 No_prior OK
Size_DblN_descend_se_F6-OBJ_CC(6)_BLK2repl_25 3.5646000 3 -15 15.0 4.0000000 OK 1.3673800 1.28032e-05 No_prior OK
Size_DblN_peak_F7-OBJ_NC(7)_BLK2repl_25 46.9959000 3 20 109.5 50.0000000 OK 0.7864460 -1.47612e-05 No_prior OK
Size_DblN_top_logit_F7-OBJ_NC(7)_BLK2repl_25 -0.7394540 4 -15 15.0 -5.0000000 OK 0.1583780 -7.39877e-06 No_prior OK
Size_DblN_ascend_se_F7-OBJ_NC(7)_BLK2repl_25 3.8331100 3 -15 15.0 4.0000000 OK 0.1366990 5.11306e-05 No_prior OK
Size_DblN_descend_se_F7-OBJ_NC(7)_BLK2repl_25 3.3853000 3 -15 15.0 4.0000000 OK 0.6896010 3.4094e-06 No_prior OK
Size_DblN_peak_F11-NOA-C(11)_BLK2repl_25 48.3458000 3 20 109.5 50.0000000 OK 1.0982300 8.41382e-07 No_prior OK
Size_DblN_top_logit_F11-NOA-C(11)_BLK2repl_25 -1.4519800 4 -15 15.0 -5.0000000 OK 0.3276770 9.39458e-06 No_prior OK
Size_DblN_ascend_se_F11-NOA-C(11)_BLK2repl_25 3.6103400 3 -15 15.0 4.0000000 OK 0.2080050 9.14372e-06 No_prior OK
Size_DblN_descend_se_F11-NOA-C(11)_BLK2repl_25 4.3142600 3 -15 15.0 4.0000000 OK 0.5869510 1.74133e-07 No_prior OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Size_DblN_ascend_se_F8-NOA-Offshore_Small(8) Size_DblN_peak_F8-NOA-Offshore_Small(8) 0.997452
Size_DblN_ascend_se_F6-OBJ_CC(6) Size_DblN_peak_F6-OBJ_CC(6) 0.977943
Size_DblN_ascend_se_F11-NOA-C(11) Size_DblN_peak_F11-NOA-C(11) 0.95714
Size_DblN_ascend_se_F13-DEL-N(13) Size_DblN_peak_F13-DEL-N(13) 0.955082
Size_DblN_ascend_se_F7-OBJ_NC(7) Size_DblN_peak_F7-OBJ_NC(7) 0.946859
Size_DblN_ascend_se_F11-NOA-C(11)_BLK2repl_25 Size_DblN_peak_F11-NOA-C(11)_BLK2repl_25 0.944075
Size_DblN_descend_se_F6-OBJ_CC(6)_BLK2repl_25 Size_DblN_top_logit_F6-OBJ_CC(6)_BLK2repl_25 -0.935972
Size_DblN_ascend_se_F7-OBJ_NC(7)_BLK2repl_25 Size_DblN_peak_F7-OBJ_NC(7)_BLK2repl_25 0.928692
Size_DblN_ascend_se_F9-NOA-Offshore_Large(9) Size_DblN_peak_F9-NOA-Offshore_Large(9) 0.927173
Size_DblN_descend_se_F7-OBJ_NC(7) Size_DblN_top_logit_F7-OBJ_NC(7) -0.917561
Size_DblN_ascend_se_F1-OBJ_Offshore_Small(1) Size_DblN_peak_F1-OBJ_Offshore_Small(1) 0.916244
Size_DblN_ascend_se_F6-OBJ_CC(6)_BLK2repl_25 Size_DblN_peak_F6-OBJ_CC(6)_BLK2repl_25 0.914607
Size_DblN_ascend_se_F12-NOA-N(12) Size_DblN_peak_F12-NOA-N(12) 0.914392
Size_DblN_ascend_se_S1-OBJ(17) Size_DblN_peak_S1-OBJ(17) 0.910016
Size_DblN_ascend_se_F10-NOA-S(10) Size_DblN_peak_F10-NOA-S(10) 0.905796
Size_DblN_ascend_se_F3-OBJ_Central_Small(3) Size_DblN_peak_F3-OBJ_Central_Small(3) 0.904399
Size_DblN_ascend_se_F1-OBJ_Offshore_Small(1)_BLK2repl_25 Size_DblN_peak_F1-OBJ_Offshore_Small(1)_BLK2repl_25 0.901668
Size_DblN_top_logit_F9-NOA-Offshore_Large(9) Size_DblN_peak_F9-NOA-Offshore_Large(9) -0.901326
Size_DblN_ascend_se_F5-OBJ_SC(5) Size_DblN_peak_F5-OBJ_SC(5) 0.896518
SizeSpline_Val_2_F16-LL(16) SizeSpline_GradLo_F16-LL(16) 0.875562
Early_InitAge_1 SR_regime_BLK1add_24 -0.870758
Size_DblN_descend_se_F7-OBJ_NC(7)_BLK2repl_25 Size_DblN_top_logit_F7-OBJ_NC(7)_BLK2repl_25 -0.8508
Size_DblN_descend_se_F11-NOA-C(11)_BLK2repl_25 Size_DblN_top_logit_F11-NOA-C(11)_BLK2repl_25 -0.839472
Size_DblN_ascend_se_F9-NOA-Offshore_Large(9) Size_DblN_top_logit_F9-NOA-Offshore_Large(9) -0.835952
Size_DblN_descend_se_F4-OBJ_Central_Large(4) Size_DblN_peak_F4-OBJ_Central_Large(4) -0.827011
Early_InitAge_2 SR_regime_BLK1add_24 -0.815628
Early_InitAge_1 Early_InitAge_2 0.801541
Size_DblN_top_logit_F6-OBJ_CC(6) Size_DblN_peak_F6-OBJ_CC(6) -0.77274
Size_DblN_descend_se_F13-DEL-N(13) Size_DblN_top_logit_F13-DEL-N(13) -0.771236
Size_DblN_descend_se_F2-OBJ_Offshore_Large(2) Size_DblN_peak_F2-OBJ_Offshore_Large(2) -0.767917
Size_DblN_descend_se_F11-NOA-C(11) Size_DblN_top_logit_F11-NOA-C(11) -0.751031
Size_DblN_ascend_se_F6-OBJ_CC(6) Size_DblN_top_logit_F6-OBJ_CC(6) -0.744117
Early_InitAge_1 Early_InitAge_3 0.704323
Size_DblN_descend_se_F6-OBJ_CC(6) Size_DblN_top_logit_F6-OBJ_CC(6) -0.693676
Size_DblN_top_logit_F11-NOA-C(11) Size_DblN_peak_F11-NOA-C(11) -0.655425
Size_DblN_descend_se_F10-NOA-S(10) Size_DblN_peak_F10-NOA-S(10) -0.644299
Early_InitAge_3 SR_regime_BLK1add_24 -0.633661
InitF_seas_1_flt_7F7-OBJ_NC Early_InitAge_1 -0.607284
Size_DblN_ascend_se_F11-NOA-C(11) Size_DblN_top_logit_F11-NOA-C(11) -0.603676
Size_DblN_descend_se_F12-NOA-N(12) Size_DblN_peak_F12-NOA-N(12) -0.59668
Size_DblN_descend_se_F1-OBJ_Offshore_Small(1)_BLK2repl_25 Size_DblN_peak_F1-OBJ_Offshore_Small(1)_BLK2repl_25 -0.591088
Size_DblN_descend_se_F3-OBJ_Central_Small(3) Size_DblN_peak_F3-OBJ_Central_Small(3) -0.591084
Size_DblN_descend_se_F5-OBJ_SC(5) Size_DblN_peak_F5-OBJ_SC(5) -0.577036
Size_DblN_end_logit_F4-OBJ_Central_Large(4) Size_DblN_descend_se_F4-OBJ_Central_Large(4) -0.570916
SizeSpline_Val_3_F16-LL(16) SizeSpline_GradLo_F16-LL(16) 0.560547
InitF_seas_1_flt_7F7-OBJ_NC Early_InitAge_2 -0.550793
InitF_seas_1_flt_7F7-OBJ_NC SR_regime_BLK1add_24 0.550531
Size_DblN_descend_se_F1-OBJ_Offshore_Small(1) Size_DblN_peak_F1-OBJ_Offshore_Small(1) -0.536501
Size_DblN_top_logit_F13-DEL-N(13) Size_DblN_peak_F13-DEL-N(13) -0.52602
Size_DblN_descend_se_F10-NOA-S(10) Size_DblN_ascend_se_F10-NOA-S(10) -0.524013

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Late_RecrDev_96 0
Early_InitAge_10 0.00255935
Early_InitAge_9 0.00409564
Size_DblN_top_logit_S1-OBJ(17) 0.00464481
Size_DblN_top_logit_F1-OBJ_Offshore_Small(1) 0.00697235
Size_DblN_top_logit_F1-OBJ_Offshore_Small(1)_BLK2repl_25 0.0113705
Early_InitAge_8 0.0149003
Size_DblN_top_logit_F3-OBJ_Central_Small(3) 0.0191965
Size_DblN_top_logit_F5-OBJ_SC(5) 0.021608
Size_DblN_top_logit_F10-NOA-S(10) 0.041567
Size_DblN_end_logit_F9-NOA-Offshore_Large(9) 0.0697031
Early_InitAge_7 0.0833834
Main_RecrDev_94 0.163313
Main_RecrDev_80 0.163339
Main_RecrDev_81 0.182937
Main_RecrDev_92 0.183909
Main_RecrDev_53 0.194446
Late_RecrDev_95 0.213359
Main_RecrDev_85 0.228347
Size_DblN_top_logit_F12-NOA-N(12) 0.233009
Main_RecrDev_48 0.234664
Main_RecrDev_84 0.235987
Main_RecrDev_44 0.237426
Main_RecrDev_63 0.241752
Main_RecrDev_47 0.242376
Main_RecrDev_42 0.250343
Main_RecrDev_93 0.258647
Main_RecrDev_90 0.261788
Main_RecrDev_83 0.263822
Main_RecrDev_52 0.264539
Main_RecrDev_56 0.267612
Main_RecrDev_46 0.27069
Main_RecrDev_60 0.270922
Main_RecrDev_82 0.273886
Main_RecrDev_50 0.274198
Early_InitAge_6 0.276465
Early_InitAge_4 0.279812
Main_RecrDev_78 0.282543
Main_RecrDev_91 0.286858
Main_RecrDev_77 0.295557
Main_RecrDev_72 0.298329
Main_RecrDev_49 0.302623
Main_RecrDev_51 0.302623
SizeSpline_Val_4_F16-LL(16) 0.305104
Main_RecrDev_55 0.305688
Main_RecrDev_88 0.307723
Main_RecrDev_76 0.308291
Main_RecrDev_69 0.308753
Main_RecrDev_79 0.310143
Main_RecrDev_68 0.312881